salam 3alaikum, masha'Allah, i tested your app under linux and it works nicely (you just need to change the ; to : in the script for separating the elements of the classpath).
i just had a question though - did you use the java libquran? because it seemed that your version 0.05 (the only one for which i saw source code on the webpage) used your own library, and i can't figure out if you are using the same thing for 0.06
your readme though hints that you do, "Differences to the library provided by arabeyes.org:" -- if in fact you do, could we merge those changes into cvs for the benefit of others who choose to use this library later on?
Salam, Riyad Preukschas